Modules avx2

Module	Type	Versions	Documentation
4ti2	-	1.6.9
abaqus	phys	2021, 2026	Abaqus
abinit	chem	9.2.2, 9.6.2, 10.0.3, 10.2.3	ABINIT
abricate	-	1.0.0
abseil	-	20230125.3
abyss	bio	2.1.5, 2.2.5, 2.3.7
actc	-	1.1
admixture	bio	1.3.0
adol-c	-	2.7.2
adtree	-	1.1.2
advisor	tools	2020.3
afni	bio	20.3.05, 21.2.10, 22.1.12, 23.1.00, 23.1.08, 24.1.03, 26.0.09
alevin-fry	-	0.8.2
alm	-	2.0.0_dev.2
almosthere	-	1.0.10, 1.0.15
alpscore	phys	2.2.0
amber	chem	22.5-23.5, 18.14-18.17, 20.12-20.15, 20.9-20.15
amber-pmemd	-	24.3
ambertools	chem	20, 21, 22, 23.5, 25.0
amos	-	3.1.0
ampl-mp	-	3.1.0
amrfinderplus	-	3.11.18, 3.11.26, 3.12.8, 4.2.7
amrplusplus	-	2.0-20200114
andi	-	0.14
angsd	bio	0.933, 0.935, 0.936, 0.939, 0.940
annovar	bio	20191024
anserini	-	0.9.4
ansys	phys	2025R2.04, 2025R1.02, 2024R2.04, 2024R1.03, 2019R3, 2020R2, 2021R1, 2021R2, 2022R1, 2022R2, 2023R1, 2023R2, 2024R1, 2025R1	Ansys
ansysedt	-	2024R2.1, 2021R2, 2023R2
ant	tools	1.9.15, 1.10.8, 1.10.14
antlr	-	2.7.7
ants	vis	2.3.2, 2.3.5, 2.4.4, 2.5.0, 2.6.0, 2.6.1, 2.6.2, 2.6.5
any2fasta	-	0.4.2
aocl-blas	-	5.1
aocl-lapack	-	5.1
apbs	chem	1.3
apptainer	-	1.1.3, 1.1.5, 1.1.6, 1.1.8, 1.2.4, 1.3.4, 1.3.5, 1.4.5
aragorn	-	1.2.38, 1.2.41
arb	-	2.19.0
arcs	bio	1.2.1, 1.2.5, 1.2.7
argtable	tools	2.13
arioc	-	1.43
arks	-	1.0.4
armadillo	math	9.900.2, 12.6.4
arpack-ng	math	3.7.0, 3.8.0, 3.9.0, 3.9.1
arrayfire	-	3.7.3, 3.8.2, 3.9.0, 3.10.0
arrow	tools	0.16.0, 0.17.1, 5.0.0, 8.0.0, 9.0.0, 10.0.1, 11.0.0, 12.0.1, 13.0.0, 14.0.0, 14.0.1, 15.0.1, 16.1.0, 17.0.0, 18.1.0, 19.0.1, 21.0.0, 22.0.0, 23.0.1
ascp	tools	3.5.4
aspect	-	2.3.0, 2.4.0, 3.0.0
assimp	-	5.0.0, 5.2.5
astrid	-	2.2.1
atat	-	3.36
atom	chem	4.2.7_2
atomicrex	chem	1.0.20181114
atompaw	chem	4.1.0.6, 4.2.0.3
augustus	bio	3.3.3, 3.4.0, 3.5.0
autodiff	-	0.6.0, 0.6.12
autodock-gpu	-	1.5.3, 1.6
autodock-vina	-	1.2.6
autodock_vina	chem	1.1.2
babel	-	2.17.0
bacio	-	2.6.0
bamm	bio	2.5.0
bamtools	bio	2.5.1, 2.5.2
bamutil	bio	1.0.14
barracuda	-	0.7.107h
barrnap	-	0.9
bayesass	bio	3.0.4
bayesass3-snps	-	1.1
bayescan	bio	2.1
baypass	bio	2.1, 2.2
bazel	tools	3.6.0
bbmap	bio	37.78, 38.86, 39.06
bcftools	bio	1.9, 1.10.2, 1.11, 1.13, 1.16, 1.18, 1.19, 1.22
bcl-convert	-	4.2.4, 4.2.7
bcl2fastq2	bio	2.20.0
beagle	-	5.4-240301
beagle-lib	bio	3.1.2, 4.0.0, 4.0.1
beast	bio	2.6.3, 2.7.5, 2.7.7
bedops	-	2.4.39, 2.4.41
bedtools	bio	2.29.2, 2.30.0, 2.31.0
beef	chem	0.1.1
berkeleygw.)	phys	2.1.0, 3.0.1, 4.0
bgcdist	-	1.03
bgen-lib	-	1.1.7
bifrost	-	1.0.5
bigdft	chem	1.8.3, 1.9.5
bio-searchio-hmmer	-	1.7.3
bioawk	-	1.0
biobloomtools	-	2.3.2-20200731, 2.3.3
bioperl	bio	1.7.7, 1.7.8
biopp	-	2.4.1
bismark	-	0.22.3, 0.24.1, 0.25.1
bison	-	3.7.1, 3.8.2
blacs	math	1.1
blasr	bio	5.3.3
blasr_libcpp	bio	5.3.4
blast	bio	2.2.26
blast+	bio	2.10.1, 2.11.0, 2.12.0, 2.13.0, 2.14.0, 2.14.1, 2.17.0	BLAST
blat	bio	3.5, 3.7
blender	vis	2.92.0, 3.6.0, 4.0.2, 4.2.8
blis	-	0.8.1, 0.9.0, 1.0, 2.0
blitz++	tools	1.0.2
blosc	-	1.17.1, 1.21.3
blosc2	-	2.10.3, 2.10.5, 2.21.1
bmtagger	-	3.101
bolt-lmm	bio	2.3.4, 2.4
boltztrap	phys	1.2.5
boost	tools	1.72.0, 1.76.0, 1.80.0, 1.82.0, 1.85.0, 1.88.0
boost-build	-	1.80.0
boost-mpi	tools	1.72.0, 1.80.0, 1.82.0
bowtie	bio	1.3.0
bowtie2	bio	2.4.1, 2.4.2, 2.4.4, 2.5.1, 2.5.2, 2.5.4
bpp	-	4.3.8, 4.6.1
bracken	-	2.6.0, 2.7, 3.0
breseq	-	0.35.2, 0.36.1, 0.38.2
brotli	-	1.0.9
brunsli	-	0.1
btllib	-	1.6.2
bufr	-	12.0.1
bufrlib	geo	11.3.0.2
bullet	-	2.89, 3.24
bustools	-	0.40.0
bwa	bio	0.7.17, 0.7.18
bwa-mem2	-	2.2.1
bwidget	-	1.9.14
caf	-	0.18.3
cafe5	-	5.1.0
calibre	-	8.6.0
campari	-	5.0
cantera	chem	2.4.0, 2.5.1, 2.6.0, 3.2.0
canu	bio	2.0, 2.1.1, 2.2, 2.3
cap3	bio	20151002
capnproto	-	0.7.0, 1.0.2
casacore	-	3.6.1, 3.7.1
casadi	-	3.6.3, 3.6.7
casper	bio	0.8.2
catch2	-	2.11.0, 3.2.1
ccfits	vis	2.5
ccsm	geo	4_0_a02
cd-hit	bio	4.8.1
cdbfasta	-	0.99
cdo	geo	1.9.8, 1.9.10, 2.0.4, 2.0.5, 2.2.1, 2.2.2
cegma	-	2.5
cellranger	bio	2.1.0
cellsnp-lite	-	1.2.2, 1.2.3
centrifuge	bio	1.0.4-beta, 1.0.4.2
cereal	-	1.3.0, 1.3.2
ceres-solver	-	1.14.0, 2.2.0
cesm	geo	2.1.3
cfitsio	vis	3.41, 3.48, 3.49, 4.1.0, 4.3.0, 4.5.0
cfour	chem	2.1
cfour-mpi	chem	2.1
cgal	math	4.14.3, 5.2.4, 5.5.2, 6.0.1
cgns	phys	3.4.1, 4.1.0, 4.1.2, 4.5.0
chapel-multicore	-	1.25.0, 1.31.0, 2.3.0, 2.4.0
chapel-ofi	-	1.25.0, 1.31.0
chapel-ucx	-	1.25.0, 1.31.0, 2.3.0, 2.4.0
chapel-ucx-cuda	-	2.3.0, 2.4.0
charm-gems	-	1.3.3
chemps2	chem	1.8.9
chrom3d	-	1.0.2
circos	vis	0.69-9
cjson	-	1.7.18
clang	tools	9.0.1, 11.0.0, 13.0.1, 15.0.2, 17.0.6, 18.1.8
clhep	math	2.4.1.3, 2.4.4.0, 2.4.6.2, 2.4.7.1
clustal-omega	bio	1.2.4
cmake	tools	3.18.4, 3.20.1, 3.21.4, 3.22.1, 3.23.1, 3.27.7, 3.31.0
cnvnator	bio	0.4.1
code-server	-	3.5.0, 3.12.0, 4.92.2, 4.101.2
coinmp	-	1.8.4
colmap	-	3.6, 3.12.6
combblas	-	1.6.2
comet-ms	-	2025.03.0
comsol	phys	5.6, 6.0.0.405, 6.1.0.357, 6.2, 6.2.0.415, 6.3, 6.4
connectomeworkbench	-	2.0.1
coordgenlibs	chem	1.4.2
coretran	-	1.0.1
corset	bio	1.09
cp2k	chem	7.1, 8.2, 9.1, 2023.1, 2025.2
cpmd	chem	4.3	CPMD
cppzmq	-	4.7.1
cpu_features	-	0.6.0
cram	-	0.7
crest	chem	2.11, 2.12, 3.0.1, 3.0.2
cromwell	tools	58
csblast	-	2.2.4
cslib	-	20180813
cst	phys	2020, 2024
csvtk	-	0.23.0
ctffind	chem	4.1.14
cuba	-	4.2.2
cubegui	-	4.4.4
cubelib	-	4.4.4
cubewriter	-	4.4.3
cubic_interpolation	-	0.1.5
cuda	tools	10.1, 10.2, 11.0, 11.1.1, 11.2.2, 11.4, 11.7, 11.8, 11.8.0, 12.2, 12.6, 12.9, 13.2	CUDA
cudnn	math	8.0.3, 8.2.0, 8.6.0.163, 8.7.0.84, 8.9.5.29, 9.2.1.18, 9.5.1.17, 9.10.0.56, 9.13.1.26
cudss	-	0.6.0.5, 0.7.1.4
cufflinks	bio	2.2.1
cuquantum	-	22.05.0.41, 23.06.1.8, 24.03.0.4, 25.06.0.10
cusparselt	-	0.4.0.7, 0.5.0.1, 0.6.1.0, 0.7.1.0, 0.8.1.1
custom-ctypes	-	1.1, 1.2, 1.4
cutensor	-	1.5.0.3, 1.7.0.1, 2.0.0.7, 2.0.1.2, 2.3.1.0, 2.4.1.4
cvit	-	1.2.1
dakota	tools	6.13, 6.22.0
dalton	chem	2020, 2020.0, 2020.1
das_tool	-	1.1.6
db	-	18.1.32
db_file	-	1.859
dcm2niix	bio	1.0.20200331, 1.0.20210317, 1.0.20230411
dcmtk	-	3.6.7
ddt-cpu	tools	20.2, 22.0.1, 23.1.1	ARM software
ddt-gpu	tools	20.2, 22.0.1, 23.1.1	ARM software
dealii	math	9.2.0, 9.3.1, 9.4.1, 9.6.2
deepvariant	-	1.8.0
deepvariant-gpu	-	1.8.0
delft3d	geo	62441	Delft3D
delly	-	0.8.5, 1.1.6, 1.1.8
detonate	bio	1.11
dftbplus	chem	21.1, 21.2, 24.1
dftd3-lib	chem	0.10
dftd4	chem	3.3.0, 3.6.0, 3.7.0
diamond	bio	0.9.36, 2.0.4, 2.0.9, 2.0.13, 2.0.15, 2.1.6, 2.1.7, 2.1.8, 2.1.11, 2.1.22
dirac	-	21.1, 23.0
dl_monte	-	2.07
dl_poly4	chem	4.10.0, 5.1.0
dmalloc	tools	5.5.2
dnmtools	-	1.4.4
dorado	-	0.2.1, 0.2.2, 0.3.0, 0.4.1, 0.4.3, 0.5.3, 0.6.1, 0.7.0, 0.7.2, 0.8.0, 0.8.3, 0.9.5, 1.0.2, 1.3.0, 1.4.0
dotnet-core	-	3.1.8, 5.0.12, 6.0.0, 8.0.407, 9.0.202
double-conversion	-	3.1.5, 3.2.1
dpc++	-	2022-06, 2022-12
dragmap	-	1.3.0
dssp	chem	2.3.0, 3.1.4
ecbuild	-	3.8.0
eccodes	geo	2.15.0, 2.19.0, 2.21.0, 2.22.1, 2.25.0, 2.31.0
ecogen	-	5.0
edirect	-	20.9.20231210
eigen	math	3.3.7, 3.4.0
eigensoft	bio	7.2.1
elastix	-	5.0.1
elixir	tools	1.13
elmerfem	-	scc20, 8.4, 9.0
elpa	math	2020.05.001, 2023.05.001, 2024.05.001
emboss	bio	6.6.0
embree	-	2.17.7, 3.11.0, 3.13.5, 4.3.0
energyplus	-	9.3.0, 23.2.0
epa-ng	-	0.3.8
erlangotp	tools	23.3, 24.2
esmf	geo	8.0.1, 8.2.0, 8.4.0, 8.6.0, 8.7.0, 8.8.0
espeak-ng	-	1.51
etsf_io	io	1.0.4
etsf_io-mpi	-	1.0.4
everybeam	-	0.7.4, 0.8.0
examl	-	3.0.22
exonerate	bio	2.4.0
expat	tools	2.2.9, 2.2.10, 2.4.1
expect	-	5.45.4
faiss	-	1.6.5, 1.7.1, 1.7.3, 1.7.4, 1.8.0, 1.12.0
falcon	bio	1.8.8
fann	-	2.2.0
fasta	bio	36.3.8i, 36.3.8h
fastahack	-	1.0.0
fastani	-	1.32
fastme	bio	2.1.6.2
fastp	bio	0.20.1, 0.23.1, 0.23.4, 0.24.0, 1.0.1
fastq-join	-	1.3.1
fastq-multx	-	1.4.0
fastq-tools	-	0.8
fastq_screen	bio	0.11.4
fastqc	bio	0.11.9, 0.12.0, 0.12.1
fastsimcoal2	bio	2.6.0.3, 2.7.0.9
fastspar	-	1.0.0
fasttree	bio	2.1.11	FastTree
fasttree-double	-	2.1.11, 2.2.0	FastTree
fastx-toolkit	bio	0.0.14
fcl	-	0.7.0
fds	-	6.7.5, 6.7.6, 6.7.7, 6.7.8, 6.7.9, 6.8.0
febio	-	4.7
fermi-lite	-	20190320
ferret	vis	7.3, 7.6.0
ffmpeg	-	4.2.2, 4.3.2, 7.1.1
ffnvcodec	-	13.0.19.0
fftw	math	3.3.8, 3.3.10
fftw-mpi	math	3.3.8, 3.3.9, 3.3.10
filevercmp	-	20191210
filtlong	bio	0.2.0, 0.2.1
flash	-	1.2.11
flashpca	-	2.0
flatbuffers	-	22.9.24, 23.3.3, 24.12.23
fleur	-	MaX-R4
flexiblas	-	3.0.4, 3.2.0, 3.3.1, 3.4.4, 3.4.5
flint	math	2.7.1, 2.9.0, 3.0.0
fmlrc2	-	0.1.8
fmm3d	-	1.0.1, 1.0.4
fmriprep	-	23.0.2, 23.1.3, 25.1.1
fmt	-	5.3.0, 6.2.1, 7.0.3, 9.1.0
fpc	tools	3.2.2
fplll	-	5.4.5
fpocket	-	3.1.4.2
fraggenescan	bio	1.30, 1.31
freebayes	bio	1.2.0, 1.3.6, 1.3.7
freesasa	-	2.1.0
freesurfer	bio	5.3.0, 7.4.1, 8.0.0-1
freexl	tools	1.0.5, 2.0.0
fsl	bio	6.0.3, 6.0.4, 6.0.7.7, 6.0.7.18, 6.0.7.20
fsom	-	20141119, 20151117
g2clib	geo	1.6.0, 1.8.0
g2lib	geo	3.1.0, 3.4.8
ga	tools	5.7.2
gamess-us	chem	20210930-R2P1, 2020.2, 20220930-R2, 20230630-R1, 20230930-R2	GAMESS-US
gapcloser	-	1.12-r6
gappa	-	0.9.0
gate	bio	9.3, 9.4
gatk	bio	4.1.8.0, 4.1.8.1, 4.2.2.0, 4.2.4.0, 4.2.5.0, 4.4.0.0, 4.6.1.0
gazebo	-	11.7.0
gblocks	-	0.91b
gcc	tools	8.4.0, 9.3.0, 10.2.0, 10.3.0, 11.3.0, 12.3, 13.3, 14.3
gclust	-	355z3
gcta	bio	1.26.0, 1.93.2, 1.94.1
gd	-	2.71, 2.77
gdal	geo	3.0.4, 3.2.3, 3.4.1, 3.4.3, 3.5.1, 3.7.2, 3.9.1
gdcm	-	2.6.8, 3.0.8
gdrcopy	-	2.1, 2.3, 2.3.1, 2.4.1, 2.5
geant4	phys	10.06, 10.7.3, 11.1.0, 11.1.2, 11.2.1, 11.3.0
geant4-data	-	10.7.3, 11.1.0, 11.1.2, 11.2.1, 11.3.0
geant4-seq	-	11.1.0
geant4-topasmc3.9	-	10.7.3
gem	-	5.1.1
gemma	bio	0.98.3, 0.98.5
geneid	-	1.4.5
genewise	-	2.4.1
gengetopt	-	2.23
genmap	-	1.3.0
genometools	bio	1.6.1, 1.6.5
gentoo	-	2020, 2023
geopsy	-	3.4.2
geos	geo	3.7.3, 3.8.1, 3.9.1, 3.10.2, 3.12.0
gerris	-	20131206
gffcompare	-	0.12.6
gffread	-	0.11.7, 0.12.3
gflags	-	2.2.2
gibbs2	-	1.0
ginkgo	-	1.6.0
git-annex	tools	8.20200810, 10.20221003, 10.20231129
git-lfs	-	2.11.0, 3.3.0, 3.4.0
givaro	-	4.2.0
glew	-	2.1.0, 2.2.0
glfw	-	3.3.2, 3.3.8, 3.4
glimmerhmm	-	3.0.4
glimpse	-	1.1.1, 2.0.0, 2.0.1
glm	vis	0.9.9.8
globalarrays	-	5.7.2, 5.8, 5.8.2
glost	tools	0.3.1
glpk	math	4.65, 5.0
gmap-gsnap	bio	2019-09-12, 2024-10-20, 2024-08-20, 2020-11-14
gmp	-	6.2.0
gmsh	phys	4.7.0, 4.10.5, 4.11.1, 4.12.2, 4.13.1
gmt	geo	6.4.0, 6.5.0
gmtk	-	1.4.4
gnina	-	1.0.1, 1.3.1
gnuplot	vis	5.2.8, 5.4.2, 5.4.6, 5.4.8, 6.0.3
go	tools	1.14.1, 1.18.3, 1.21.3
goldrush	-	1.2.2
gomc	-	2.75a
googlebenchmark	-	1.7.1, 1.8.3
googletest	tools	1.10.0, 1.13.0, 1.14.0
grace	vis	5.99.0
graph-tool	-	2.37, 2.45, 2.56, 2.98
graphaligner	-	1.0.20
grass	geo	7.8.4, 8.2.1
grenedalf	-	0.6.3
groff	-	1.22.4
gromacs	chem	2016.6, 2020.4, 2020.6, 2021.2, 2021.4, 2021.6, 2022.2, 2022.3, 2023, 2023.2, 2023.3, 2023.5, 2024.1, 2024.4, 2024.6, 2025.4, 2026.1	GROMACS
gromacs-colvars	chem	2020.6	GROMACS
gromacs-cp2k	chem	2022.2	GROMACS
gromacs-ls	-	2016.3	GROMACS
gromacs-plumed	chem	2019.6, 2020.7, 2021.2, 2021.4, 2021.6, 2021.7, 2022.3, 2022.6, 2023.5	GROMACS
gromacs-ramd	chem	2024.1-RAMD-2.1, 2020.5-RAMD-2.0
gromacs-swaxs	chem	2021.7-0.5.1	GROMACS
gsl	math	1.16, 2.6, 2.7, 2.8
gsl-lite	-	0.40.0, 0.41.0
gts	-	20121130
gudhi	-	3.4.1, 3.7.1
guile	tools	2.2.2
gurobi	math	9.0.3, 9.1.0, 9.1.2, 9.5.0, 9.5.2, 10.0.1, 10.0.2, 10.0.3, 11.0.0, 11.0.1, 11.0.3, 12.0.0, 12.0.3, 13.0.0
h4toh5	io	2.2.5
hal	bio	2.2
hapgen2	-	2.2.0
haploview	-	4.2
harminv	math	1.4.1, 1.4.2
hdf	io	4.2.15, 4.2.16
hdf-eos5	-	5.1.16
hdf-fortran	-	4.2.15
hdf5	io	1.8.22, 1.10.6, 1.10.7, 1.12.1, 1.12.2, 1.14.2, 1.14.5, 1.14.6
hdf5-mpi	io	1.8.22, 1.10.6, 1.10.7, 1.12.1, 1.12.2, 1.14.2, 1.14.4, 1.14.5, 1.14.6
hdfview	-	2.14
healpix	-	3.81, 3.82, 3.83
heasoft	phys	6.32.1
hh-suite	bio	3.3.0
hifiasm	-	0.16.1, 0.19.5
highfive	-	2.9.0
hisat2	bio	2.2.1
hmmer	bio	3.2.1, 3.3.2, 3.4
hoomd-blue	-	2.9.3, 3.6.0, 5.1.1
hoomd-blue-mpi	-	3.6.0
hpcspades	-	3.15.0
hpctoolkit	-	2020.08
hpl	tools	2.3
htslib	bio	1.9, 1.10.2, 1.11, 1.13, 1.14, 1.15.1, 1.16, 1.17, 1.18, 1.19, 1.22.1
hwloc	-	2.4.0, 2.7.1, 2.9.1, 2.10.0, 2.12.1
hyphy	bio	2.5.26, 2.5.49
hypre	math	2.20.0, 2.33.0
idba-ud	-	1.1.3
idg	-	1.2.0
igblast	bio	1.17.0, 1.18.0
ignition	-	citadel
igraph	math	0.8.2, 0.9.10, 0.10.2, 0.10.7, 0.10.13, 0.10.16, 1.0.1
igv	-	2.9.2
ijulia-kernel	-	1.5, 1.8, 1.10
ima3	-	1.12, 20210120
imb	-	2021.3
imkl	math	2020.1.217, 2021.2.0, 2021.4.0, 2022.1.0, 2023.2.0, 2024.1.0, 2024.2.0, 2025.2.0
impute2	bio	2.3.2
impute5	-	1.1.5
infernal	bio	1.1.3, 1.1.4, 1.1.5
intel	tools	2020.1.217, 2021.2.0, 2022.1.0, 2023.2.1, 2024.2.0, 2025.2.0
intel-opencl	-	2021.2.0
intelmpi	mpi	2019.7.217, 2021.2.0, 2021.6.0, 2021.9.0, 2021.16.1
intelxed	-	12.0.1
interproscan	bio	5.73-104.0, 5.50-84.0, 5.63-95.0, 5.64-96.0, 5.52-86.0, 5.53-87.0, 5.55-88.0, 5.56-89.0
interproscan_data	-	5.63-95.0, 5.73-104.0, 5.64-96.0
intervaltree	-	0.1
ioapi	-	3.2-2020111, 3.2-20200828
ipopt	-	3.14.11, 3.14.14
ipp	tools	2020.1.217
ipykernel	-	2020a, 2020b, 2021a, 2022a, 2023a, 2023b, 2024a, 2024b, 2025a, 2026a
ipython-kernel	-	2.7, 3.6, 3.7, 3.8, 3.9, 3.10, 3.11, 3.12, 3.13, 3.14
iq-tree	bio	1.6.12, 2.0.7, 2.1.2, 2.2.1, 2.2.2.7, 2.3.6
ir-kernel	-	4.2, 4.4
irfinder	-	1.3.1
isce2	-	2.6.3
ispc	-	1.10.0, 1.13.0, 1.18.0, 1.21.1
itac	tools	2021.5.0
itk	vis	4.13.3, 5.0.1, 5.1.2, 5.2.1, 5.3.0, 5.4.0, 5.4.5
ivar	-	1.4.2
jags	math	4.3.0, 4.3.2
jasper	vis	2.0.16, 4.0.0, 4.2.4
java	tools	1.8.0_192, 1.8.0_292, 11.0.16_8, 11.0.22, 13.0.2, 14.0.2, 17.0.2, 17.0.6, 21.0.1	Java
jbigkit	-	2.1
jdftx	chem	1.7.0
jellyfish	bio	2.3.0, 2.3.1
jemalloc	-	5.2.1, 5.3.0
json-fortran	-	8.3.0
jsoncpp	-	1.9.4, 1.9.5
judy	-	1.0.5
julia	tools	1.4.1, 1.5.2, 1.6.0, 1.6.1, 1.6.2, 1.7.0, 1.8.1, 1.8.5, 1.9.1, 1.9.3, 1.10.0, 1.10.10, 1.11.3, 1.12.5
kahip	-	3.14, 3.16
kahypar	-	1.3.2
kaiju	bio	1.6.2, 1.7.4, 1.10.1
kalign	-	2.03, 3.3.5
kallisto	bio	0.46.1, 0.51.1
kent_tools	-	486
kentutils	bio	401, 453
kim-api	chem	2.1.3, 2.3.0, 2.4.1
kma	-	1.3.0, 1.3.25, 1.4.14
kmergenie	-	1.7051
komplexity	-	0.3.6
kraken	bio	1.1.1
kraken2	bio	2.0.9-beta, 2.1.1, 2.1.2, 2.1.3, 2.1.6
krakenuniq	-	1.0.2, 1.0.4
kronatools	-	2.8, 2.8.1
kyotocabinet	-	1.2.80
lammps-omp	chem	20201029, 20210929, 20220623, 20230802, 20240829, 20250722	LAMMPS
last	bio	1145, 1642
lastz	-	1.04.03
latte	chem	1.2.1
ldc	-	0.17.6, 1.26.0, 1.30.0
leptonica	-	1.82.0
lerc	-	4.0.0
leveldb	tools	1.22
lhapdf	-	6.4.0
libaec	-	1.0.6
libbeef	-	0.1.2
libbigwig	-	0.4.6
libccd	-	2.1
libcdms	-	3.1.2
libcerf	math	1.13, 1.17, 2.1, 2.4
libcf	-	1.0.3
libctl	tools	4.5.0, 4.5.1
libdap	-	3.20.6, 3.20.11, 3.21.1
libdivsufsort	-	2.0.1
libdrs	-	3.1.2
libevent	-	2.1.11
libfabric	-	1.10.1, 1.11.0, 1.12.1, 1.15.1, 1.18.0, 1.21.0, 2.1.0
libfdf	-	0.2.2
libffi	-	3.3
libgd	vis	2.3.0, 2.3.3
libgdsii	-	0.21
libgeotiff	-	1.5.1, 1.6.0, 1.7.1
libgeotiff-proj901	-	1.7.1
libgridxc	chem	0.8.0
libgridxc-mpi	-	0.8.0
libgtextutils	bio	0.7
libharu	-	2.3.0
libint	chem	1.1.6, 2.0.3, 2.4.2, 2.6.0, 2.7.2
libmaus2	bio	2.0.499
libmbd	-	0.12.8
libmesh	math	1.7.1, 1.7.5
libpsml	-	1.1.8, 1.1.12
libraw	-	0.21.2
librdkafka	-	1.5.2-RC1
libreqda	-	1.0.1, 1.1.0
librmn	-	20.0.9
librttopo	-	1.1.0
librttopo-proj9	-	1.1.0
libspatialindex	phys	1.8.5, 1.9.3
libspatialite	phys	4.3.0a, 5.0.1, 5.1.0
libspatialite-proj9	-	5.0.1
libspatialite-proj901	-	5.0.1
libstatgen	-	20190330
liburing	-	2.3
libvori	-	220621
libxc	chem	2.2.2, 3.0.0, 3.0.1, 4.3.4, 5.0.0, 5.1.3, 5.2.3, 6.2.2, 7.0.0
libxslt	-	1.1.29, 1.1.34
libxsmm	math	1.16.1, 1.17
libyaml	-	0.2.5
liknorm	tools	1.5.1
limix-bgen	-	3.0.3, 4.1.0
links.)	bio	1.8.6, 2.0.1
littlecms	-	2.9, 2.11
lldb	-	11.0.0
llvm	tools	8.0.1, 9.0.1, 11.1.0, 13.0.1, 14.0.3, 16.0.6, 18.1.8, 20.1.8, 21.1.5
lmdb	-	0.9.24, 0.9.31
lpsolve	math	5.5.2.5, 5.5.2.11
ls-dyna	phys	12.0, 12.2.1, 13.0, 13.1.1	LS-DYNA
ls-dyna-mpi	phys	12.0, 12.2.1, 13.0, 13.1.1	LS-DYNA
ls-opt	phys	7.0.0
ls-prepost	-	4.8.11, 4.9.9
lsd2	-	1.9.7, 2.3, 2.4.1
ltr_retriever	-	2.9.0, 3.0.4
lumpy	bio	0.2.13
m2	-	1.19.1, 1.21
m4ri	-	20251207
m4rie	-	20250128
maeparser	chem	1.2.4
maffilter	-	2020.11
mafft	bio	7.471, 7.526
mafft-mpi	-	7.471, 7.526
magma	math	2.5.4, 2.6.1, 2.7.1, 2.7.2, 2.8.0, 2.9.0
magma-gene-analysis	-	1.10
makeinfo	-	6.7
maker	bio	3.01.03
manta	bio	1.6.0
marginpolish	-	1.3.0
mariadb	tools	10.4.13, 10.6.12, 11.5.0
mariadb-connector-c	-	3.1.7, 3.3.7
mash	-	2.3
mashmap	-	3.1.3
masurca	bio	3.4.1, 4.0.1, 4.0.3, 4.1.0
matio	io	1.5.19, 1.5.26
matlab	tools	2020a, 2020b, 2020b.4, 2020b.6, 2021a.1, 2021a.5, 2021b.3, 2022a, 2022b.2, 2023a.3, 2023b.2, 2024b.1, 2025b.1	MATLAB
maven	tools	3.6.3, 3.9.6, 3.9.10
maxbin	bio	2.2.7
mcl	math	14.137
mcr	tools	R2022b, R2021b, R2020b, R2024b, R2024a, R2025b, R2025a	MATLAB
mctc-lib	-	0.3.1
mdi	-	1.4.30
meep	phys	1.16.1, 1.24.0, 1.25.0, 1.29.0
megahit	bio	1.2.9
meme	-	5.2.0, 5.4.1, 5.5.0, 5.5.5, 5.5.7
mesa-astrophysics	phys	r24.03.1
mesquite	math	2.3.0
met	phys	9.1.1
meta-farm	-	1.0.2, 1.0.3
metabat	bio	2.12.1, 2.14, 2.17, 2.18
metaeuk	-	4-a0f584d, 6, 7
metageneannotator	-	20080819
metagenome-atlas	-	2.4.3, 2.5.0
metal	bio	2011-03-25
metamaps	-	2020.03.11
metaxa2	-	2.2
methyldackel	-	0.6.1
metis	math	5.1.0
metis-64idx	-	5.1.0
migrate-n	-	4.4.4
mii	-	1.1.1, 1.1.2
minc-toolkit	bio	1.9.18.1, 1.9.18.3
minced	-	0.4.2
minia	bio	3.2.6
miniasm	bio	0.3-20191007
minimac3	bio	2.0.1
minimac4	-	1.0.2
minimap2	bio	2.17, 2.18, 2.24, 2.26, 2.28
minpath	-	1.6
mixcr	bio	4.1.2, 4.7.0
mlflow	-	3.8.1
mlip	-	2.1
mmg	-	5.7.3
mmseqs2	-	17-b804f, 15-6f452, 14-7e284, 13-45111
modflow	-	6.5.0
molden	chem	6.5
mono	tools	6.12.0.122
mothur	bio	1.44.3, 1.46.1, 1.47.0, 1.48.0, 1.48.3
mpas	-	7.0, 8.3.1
mpb	-	1.11.1
mpb-mpi	-	1.11.1
mpi4py	tools	3.0.3, 3.1.2, 3.1.3, 3.1.4, 3.1.6, 4.0.0, 4.0.3, 4.1.0
mpsolve	-	3.2.1
mrbayes	bio	3.2.7
mrcc	-	20230828
mrtrix	bio	3.0.1, 3.0.4, 3.0.8
mscg	chem	1.7.3.1
msmc2	-	2.1.3
mstore	-	0.2.0, 0.3.0
mujoco	-	2.2.0, 2.2.2, 2.3.6, 3.0.1, 3.1.6, 3.3.0
multicharge	-	0.2.0, 0.3.0
multichoose	-	1.0.3
multiwfn	chem	3.8
mummer	bio	4.0.0beta2, 4.0.0rc1
mumps-metis	tools	5.2.1, 5.4.1, 5.7.3
mumps-parmetis	tools	5.3.5, 5.4.1, 5.7.3
muparser	math	2.2.5, 2.3.2, 2.3.4
muparserx	-	4.0.12
muscle	bio	3.8.1551, 5.1.0
mustang	-	3.2.4
mysql	tools	5.7.36, 8.3.0
n2p2	-	2.2.0
namd-multicore	chem	2.14, 3.0.1, 3.0.2	NAMD
namd-ofi	chem	2.14
namd-ofi-smp	-	2.14
namd-ucx	chem	2.14, 3.0.1, 3.0.2
namd-ucx-smp	-	2.14
nanoflann	-	1.3.2, 1.7.1
nanopolish	bio	0.11.2, 0.13.2
nauty	-	2.6r12
nccl	tools	2.7.8, 2.8.4, 2.11.4, 2.12.12, 2.18.3, 2.18.5, 2.22.3, 2.26.2, 2.27.7, 2.29.7
nciplot	-	4.0-20200624
ncl	vis	6.6.2
nco	io	4.9.5, 5.0.6, 5.1.7
ncview	vis	2.1.8
nektar++	math	5.0.1, 5.3.0, 5.7.0
netcdf	io	4.7.4, 4.8.0, 4.9.0, 4.9.2, 4.9.3
netcdf-c++-mpi	io	4.2
netcdf-c++4	io	4.3.1
netcdf-c++4-mpi	io	4.3.1
netcdf-fortran	io	4.5.2, 4.5.3, 4.6.0, 4.6.1
netcdf-fortran-mpi	io	4.5.2, 4.5.3, 4.6.0, 4.6.1
netcdf-mpi	io	4.7.4, 4.8.0, 4.8.1, 4.9.0, 4.9.2, 4.9.3
neuron	bio	7.8.2, 8.0.0, 8.2.3
newmat	-	11
nextdenovo	-	2.5.2
nextflow	-	20.10.0, 21.04.3, 21.10.3, 22.04.3, 22.10.6, 22.10.8, 23.04.3, 23.10.0, 24.04.4, 24.10.2, 25.04.6, 25.10.2
nextgenmap	bio	0.5.5
nextstrain.cli	-	3.1.0
ngmlr	-	0.2.7
ngs	-	2.10.5
ngstools	bio	1.0.1
ngt	-	2.0.13
nibabel	-	5.2.0
ninja-phylogenetics	-	0.97-cluster_only
nlohmann_json	-	3.10.2
nlopt	math	2.6.1, 2.6.2, 2.7.0, 2.7.1, 2.9.1, 2.10.0
nodejs	tools	12.16.1, 15.2.1, 16.14.0, 18.17.1, 20.16.0
nspr	-	4.25
nss	-	3.51
ntedit	-	1.3.2
ntl	math	11.4.3
nvbio	-	1.1.00.20200205
nvhpc	tools	20.7, 22.1, 22.7, 23.7, 23.9, 25.1
nwchem	chem	7.0.2-p1, 6.8.1, 7.0.0, 7.2.3
oases	-	0.2.09
occt	-	7.4.0, 7.7.1, 7.8.1
octave	tools	5.2.0, 7.2.0
octomap	-	1.10.0
octopus	chem	10.1, 10.3, 16.2
octopus-bio	-	0.7.4
ogre	-	1.10.12, 1.12.12
oligoarrayaux	-	3.8
one-dnn	-	1.8, 2.4.3
opa-psm2	-	11.2.185, 11.2.206
opari2	-	2.0.5
openbabel	chem	3.1.1
openbabel-omp	chem	3.1.1
openblas	math	0.3.9, 0.3.17, 0.3.18, 0.3.20, 0.3.24, 0.3.27, 0.3.30
opencarp	-	4.0
opencascade	-	7.5.0, 7.5.2
opencoarrays	-	2.9.2
opencolorio	vis	1.1.1, 2.2.1, 2.3.0
opencv	vis	4.4.0, 4.5.1, 4.5.5, 4.6.0, 4.7.0, 4.8.0, 4.8.1, 4.9.0, 4.10.0, 4.10.0-2, 4.11.0, 4.12.0, 4.13.0
openexr	vis	2.5.2, 3.1.5
openfast	-	3.1.0, 3.3.0, 3.5.0
openfoam	phys	8, 9, 10, 13, v2006, v2012, v2112, v2206, v2212, v2306, v2312, v2406, v2412	OpenFOAM
openfoam-extend	phys	4.1
openfst	-	1.8.3, 1.8.4
openimagedenoise	-	1.2.2, 1.4.3, 2.0.1, 2.1.0
openimageio	vis	2.1.17.0, 2.4.7.1, 2.4.14.0
openmc	-	0.13.2, 0.13.3, 0.15.0
openmm	chem	7.5.0, 7.6.0, 7.7.0, 8.0.0, 8.1.1, 8.2.0, 8.4.0
openmm-alphafold	-	7.5.1
openmm-plumed	-	1.0
openmolcas	chem	20.10, 25.06
openmpi	mpi	4.0.3, 4.0.5, 4.1.1, 4.1.4, 4.1.5, 5.0.3, 5.0.8
openmx	chem	3.9, 3.9.9
openpgm	tools	5.2.122
openrefine	-	3.4.1, 3.9.3
opensees	-	3.2.0, 3.4.0, 3.5.0, 3.7.1
opensim	-	4.5.1
openslide	vis	3.4.1, 4.0.0
opensubdiv	-	3.4.4
openvdb	-	7.0.0, 10.0.1, 10.1.0
openvkl	-	0.10.0, 1.3.1, 1.3.2
opera-ms	-	0.9.0-20200802
optix	-	6.5.0, 7.7.0, 8.0.0
orad	-	2.6.1
orca	chem	4.2.1, 5.0.1, 5.0.2, 5.0.3, 5.0.4, 6.0.0, 6.0.1, 6.1.0, 6.1.1	ORCA
orthomcl	bio	2.0.9
oskar	-	2.11.1
ospray	-	1.8.5, 2.2.0, 2.10.0, 2.12.0
osrm-backend	-	5.26.0
osu-micro-benchmarks	tools	5.6.2, 5.6.3, 5.9, 7.1-1, 7.2, 7.4
otf2	-	2.2
ovito	-	3.3.3
p4est	math	2.2, 2.3.2, 2.8.5, 2.8.6
packmol	chem	20.3.3
pagmo	-	2.18.0
pairix	-	0.3.7
paml	bio	4.9j, 4.10.7
panther	-	14.1
papi	tools	6.0.0
parallelio	-	2.5.4, 2.6.3
parasail	-	2.5, 2.6.2
paraview	vis	5.8.0, 5.9.1, 5.10.0, 5.11.0, 5.11.2, 5.13.1, 6.0.0	Visualization
paraview-offscreen	vis	5.8.0, 5.9.1, 5.10.0, 5.11.0	Visualization
paraview-offscreen-gpu	vis	5.8.0, 5.9.1, 5.10.0, 5.11.0	Visualization
pari-gp	-	2.13.0, 2.15.5
parmetis	math	4.0.3
parmgridgen	math	1.0
parsplice	-	1.1
pbbam	bio	1.0.7, 1.7.0
pbcopper	-	1.4.0, 1.9.0
pbmm2	-	1.7.0
pbsuite	bio	15.8.24
pcl	math	1.14.1
pcre	-	8.44
pcre2	-	10.34
pdal	-	2.7.1
pdt	-	3.25.1
pear	bio	0.9.11
penncnv	bio	1.0.5
percolator	bio	3.06, 3.8
perl	tools	5.30.2, 5.36.1	Perl
petsc	tools	3.12.4, 3.13.3, 3.13.6, 3.14.1, 3.15.0, 3.17.1, 3.19.2, 3.20.0, 3.21.6, 3.23.4
petsc-64bits	tools	3.17.1, 3.19.2, 3.21.6, 3.23.4
petsc-complex	tools	3.20.0
petsc-pardiso	-	3.17.1
petsc-pardiso-64bits	-	3.17.1
pfamscan	-	1.6
pfft	math	1.0.8-alpha
pflotran	-	4.0, 5.0.0, 6.0.0
pftoolsv3	-	3.2.12
pgplot	vis	5.2.2
phast	-	1.6
phon	-	1.48
photospline	-	2.2.1
phylip	bio	3.698
phylobayes	bio	4.1c
phylobayes-mpi	bio	1.9, 20180420, 20201026
phylokit	-	1.0
phyml	-	3.3.20190321
phyx	bio	1.1
picard	bio	2.23.3, 2.26.3, 3.1.0
pilercr	-	1.06
pilon	bio	1.23, 1.24
pindel	bio	0.2.5b9-20170508
platanus	bio	1.2.4
platanus-allee	-	2.2.2
plink	bio	2.0.0-a.6.32, 1.9b_6.21-x86_64, 2.00a3.6, 2.00-20231024-avx2, 2.00-10252019-avx2, 2.00a5.8
plplot	-	5.15.0
plumed	chem	2.6.1, 2.6.2, 2.7.0, 2.7.1, 2.7.2, 2.7.3, 2.7.4, 2.7.6, 2.8.1, 2.8.3, 2.8.4, 2.9.0, 2.9.2, 2.9.4, 2.10.0
pluto	-	0.14.7
pmix	-	3.1.5, 3.2.3, 4.1.2, 4.2.4, 5.0.2, 5.0.8
pnetcdf	io	1.9.0, 1.10.0, 1.12.2, 1.12.3
podman	-	4.1.1, 4.5.0, 4.9.5, 5.7.1
polymake	-	4.14
poplddecay	-	3.41, 3.43
popscle	-	0.1-beta
portaudio	-	190600_20161030, 190700_20210406
postgresql	tools	12.4, 13.2, 14.2, 15.3, 16.0
pov-ray	-	3.8.0-x.10064738, 3.7.0.10
pplacer	bio	1.1.alpha19, 1.1.alpha22
prank	bio	170427
primer3	-	2.5.0
primme	-	3.2
prinseq	bio	0.20.4
prism	-	4.7
prodigal	bio	2.6.3
prodigal-gv	-	2.6.3
proj	geo	4.9.3, 6.3.2, 7.0.0, 7.0.1, 7.2.1, 8.0.0, 9.0.0, 9.0.1, 9.2.0, 9.4.1
proj4-fortran	geo	1.0
prokka	-	1.14.5
protobuf	tools	3.12.3, 3.19.4, 3.21.3, 24.4
prrte	-	3.0.5, 3.0.11
psfex	-	3.21.1
psi4	chem	1.3.2, 1.4, 1.5, 1.9, 1.9.1
psipred	-	4.02
psmc	bio	0.6.5
ptex	-	2.3.2
pullseq	-	1.0.2
pyne	-	0.7.3, 0.7.7
pypy	tools	5.8.0, 7.3.3
pytest	-	6.1.2, 6.2.5, 7.0.1, 7.4.0, 8.2.2, 8.4.1, 9.0.2
python	tools	2.7.18, 3.6.10, 3.7.7, 3.7.9, 3.8.2, 3.8.10, 3.9.6, 3.10.2, 3.10.13, 3.11.2, 3.11.5, 3.12.4, 3.13.2, 3.14.2	Python
python-build-bundle	-	2022a, 2023a, 2023b, 2024a, 2025a, 2025b, 2026a
q6	-	6.0
qca	geo	2.3.0, 2.3.5, 2.3.7
qcint	-	4.4.6, 5.1.5, 5.1.7, 5.1.8, 6.1.2
qctool	-	2.2.0
qgis	geo	3.10.6, 3.16.10, 3.22.14, 3.28.12
qhull	math	2019.1, 2020.2
qiime2	-	2021.11, 2023.5, 2024.5
qjson	tools	0.9.0
qrupdate	math	1.1.2
qscintilla	tools	2.11.2, 2.11.6, 2.14.1
qt	tools	5.12.8, 5.15.2, 5.15.8, 5.15.11, 6.5.3
qt5webkit	-	5.212.0-alpha4
qtkeychain	-	0.9.1, 0.13.2, 0.14.1
qtltools	-	1.3.1
qualimap	-	2.3
quantumatk	-	2019.12, 2020.09, 2022.03, 2024.09
quantumespresso	chem	6.5, 6.6, 6.7, 6.8, 7.0, 7.1, 7.2, 7.3.1, 7.5	Quantum ESPRESSO
quast	-	5.0.2, 5.2.0
quest	-	4.2.0
qwt	tools	6.1.4, 6.2.0
qwtpolar	tools	1.1.1
r	tools	4.0.0, 4.0.2, 4.0.5, 4.1.0, 4.1.2, 4.2.1, 4.2.2, 4.3.1, 4.4.0, 4.5.0	R
r-bundle-bioconductor	bio	3.12, 3.14, 3.16, 3.17, 3.18, 3.20, 3.21
r2r	-	1.0.6
racket	-	7.8
racon	bio	1.4.3, 1.4.13, 1.5.0
randomlib	-	1.10
rapidjson	-	1.1.0
rapsearch2	-	2.24
raqm	-	0.9.0, 0.10.1
rarray	-	2.8.0
raspa2	-	2.0.47
raspa3	-	3.0.3
ratatosk	-	0.7.6.3
raven	-	1.5.0, 1.8.3
raxml	bio	8.2.12
raxml-ng	-	1.0.1, 1.2.0
raxml-pthreads	-	8.2.12
ray	bio	3.0.1
rcorrector	-	1.0.4, 1.0.6
rdkit	chem	2019.03.4, 2020.09.1b1, 2021.03.3, 2021.09.3, 2021.09.4, 2022.09.4, 2023.09.3, 2023.09.5, 2024.03.4, 2024.03.5, 2024.09.6, 2025.09.1, 2025.09.4
re2c	-	1.3
recon	bio	1.08
reduce	-	4.14
reframe	-	3.12.0
regenie	-	2.2.4, 3.0, 3.2.1
regtools	-	1.0.0
relion	chem	3.1.1, 4.0.0, 5.1.0
repasthpc	bio	2.2.0, 2.3.0
repeatmasker	bio	4.1.2-p1, 4.1.1, 4.1.4, 4.2.1
repeatmodeler	bio	2.0.1, 2.0.2a, 2.0.3, 2.0.7
repeatscout	bio	1.0.5, 1.0.7
revbayes	-	1.1.1
rgaugury	-	2.1.3
rkcommon	-	1.4.2, 1.10.0, 1.11.0
rmats	-	4.1.1, 4.1.2, 4.3.0
rmblast	bio	2.10.0, 2.14.1
rnacode	-	0.3
rnammer	bio	1.2
roary	bio	3.13.0
rocksdb	-	7.10.2
root	tools	6.20.04, 6.24.06, 6.26.06, 6.28.06
rosetta	chem	3.10, 3.12, 3.13, 2019.21.60746
rsem	bio	1.3.3
rstudio-server	tools	4.1, 4.2, 4.3, 4.4, 4.5
rtk	bio	1.4.0
ruamel.yaml	-	0.17.21
ruby	tools	2.7.1, 3.2.2
rust	tools	1.47.0, 1.53.0, 1.59.0, 1.65.0, 1.70.0, 1.73.0, 1.76.0, 1.85.0, 1.91.0
sabre	bio	1.00
saga	-	8.2.2, 9.11.0
sagemath	tools	9.1, 9.3
salmon	bio	1.3.0, 1.4.0, 1.7.0, 1.10.2
salmonbeta	bio	0.6.0
sambamba	bio	0.8.0, 1.0.1
samblaster	bio	0.1.26
samstat	-	1.5.1
samtools	bio	0.1.18, 0.1.20, 1.10, 1.11, 1.12, 1.13, 1.15.1, 1.16.1, 1.17, 1.18, 1.22.1
savvy	-	2.1.0
sbt	tools	1.3.13
scafacos	-	1.0.4
scalapack	math	2.1.0, 2.2.0
scalasca	-	2.5
scipoptsuite	-	9.0.0
scipy-stack	math	2020a, 2020b, 2021a, 2022a, 2023a, 2023b, 2024a, 2024b, 2025a, 2026a	Python
score-p	-	6.0
scotch	math	6.0.9, 7.0.3
scotch-no-thread	-	6.1.2, 7.0.3
scythe	-	0.994
sdl2	tools	2.0.16
sdsl	-	2.1.1-20191211
sdsl-lite	-	2.0.3, 2.1.1
selscan	bio	2.0.3
seqan-library	-	2.4.0
seqkit	-	0.13.2, 0.15.0, 2.3.1, 2.5.1
seqlib	-	1.2.0
seqtk	bio	1.3, 1.4
shapeit	-	2.r904
shapeit4	-	4.2.0, 4.2.1
shapeit5	-	5.1.1
shasta	-	0.10.0
shengbte	phys	1.1.1, 1.5.0
shrinkwrap	-	1.2.0
sibelia	-	3.0.7
sickle	bio	1.33
siegfried	-	1.11.2
siesta	chem	4.1-MaX-3.0, 4.0.1, 4.1-b4, 4.1.5, 5.0, 5.4.0
signalp	bio	4.1f
silix	-	1.3.0
simbac	-	0.1a
simbody	-	3.7
simka	-	1.5.3
simnibs	-	4.1.0
simple-dftd3	-	0.7.0, 1.0.0
singular	-	4.2.1
sionlib	-	1.7.6
skani	-	0.2.2
sleef	-	3.8
slepc	-	3.14.2, 3.17.2, 3.19.2, 3.20.1, 3.21.2
slepc-complex	-	3.20.1
slicer	-	4.11.20210226
slim	-	3.4.0, 4.0.1, 4.3, 5.0
slurm-completion	-	23.02.7
smartdenovo	-	20180219
smithwaterman	-	20160702
smrtlink	-	25.3.0.273777
smrtlink-sequel2	-	13.1.0.221970
snap	bio	2017-05-17
snappy	tools	1.1.8
sniffles	-	1.0.12b
snp-sites	-	2.5.1
snpeff	bio	5.0, 5.2
soapdenovo-trans	-	1.0.4
soapdenovo2	bio	r242
soci	-	4.0.2, 4.0.3
sortmerna	bio	4.2.0, 4.3.4, 4.3.6
soundtouch	-	2.3.3
spades	bio	3.14.1, 3.15.1, 3.15.3, 3.15.4, 4.0.0, 4.2.0
spark	tools	3.0.0, 3.3.0, 3.5.6	Apache Spark
sparsehash	-	2.0.4
spdlog	-	1.9.2, 1.11.0
spectra	-	0.9.0, 1.0.1
spglib	chem	1.16.0, 2.0.2
spoa	-	3.4.0
sprng	math	5.0
sqlite	-	3.36, 3.38.5, 3.43.1
sra-toolkit	bio	2.10.8, 3.0.0, 3.0.9
srprism	-	3.1.2
ssw	-	1.1, 1.2.5
stacks	bio	2.53, 2.55, 2.57, 2.59, 2.60, 2.62, 2.64, 2.66, 2.67
star	bio	2.7.5a, 2.7.8a, 2.7.9a, 2.7.11a, 2.7.11b
star-fusion	-	1.10.0
starccm	phys	15.04.010-R8, 16.02.008-R8, 16.02.009-R8, 16.04.007-R8, 16.04.012-R8, 16.06.008-R8, 17.02.007-R8, 17.02.008-R8, 17.04.007-R8, 17.04.008-R8, 17.06.007-R8, 17.06.008-R8, 18.02.008-R8, 18.04.008-R8, 18.04.009-R8, 18.06.006-R8, 18.06.007-R8, 19.04.007-R8, 19.04.009-R8, 19.06.009-R8, 20.02.008-R8, 20.04.007-R8, 20.04.008-R8, 20.06.010-R8	StarCCM
starccm-mixed	phys	15.04.010, 16.02.008, 16.02.009, 16.04.007, 16.04.012, 16.06.008, 17.02.007, 17.02.008, 17.04.007, 17.04.008, 17.06.007, 17.06.008, 18.02.008, 18.04.008, 18.04.009, 18.06.006, 18.06.007, 19.04.007, 19.04.009, 19.06.009, 20.02.008, 20.04.007, 20.04.008, 20.06.010	StarCCM
statistics-r	-	0.34
stringtie	bio	2.1.3, 2.1.5, 2.2.1, 2.2.3, 3.0.1
structure	bio	2.3.4
su2	math	7.0.8, 7.5.1, 8.4.0
subread	bio	2.0.1, 2.0.3, 2.0.6
suitesparse	math	5.7.1, 5.10.1, 5.13.0, 7.6.0
suitesparse-32idx	-	7.6.0
sumo	-	1.7.0, 1.9.0, 1.9.2, 1.15.0
sundials	-	2.7.0, 5.3.0, 5.7.0, 6.4.1, 6.6.0
superlu	math	5.2.1, 7.0.1
supernova	bio	2.1.1
survivor	-	1.0.7
svaba	-	1.1.0
swat+	-	60.5.1
swi-prolog	-	9.0.3
swig	-	4.0.1, 4.0.2, 4.1.1, 4.2.1
symengine	-	0.6.0, 0.8.1, 0.9.0, 0.10.1, 0.11.1, 0.11.2, 0.13.0, 0.14.0
tabix	bio	0.2.6
tabixpp	-	1.1.0, 1.1.2
tau	tools	2.30.1
taudem	-	5.3.8
taxonkit	-	0.6.2
tbb	tools	2020.2, 2021.8.0, 2021.10.0
tbl2asn	-	25.8
tblite	-	0.3.0, 0.5.0
telemac-mascaret	-	8p5r0
tensorboard	-	2.20.0
tensorrt	-	8.6.1.6
tesseract	-	4.1.3, 5.0.1
thrift	-	0.13.0, 0.14.2, 0.16.0, 0.18.1, 0.19.0, 0.22.0
tiledb	-	2.17.1, 2.29.0
tmhmm	bio	2.0c
togl	-	2.0
tophat	bio	2.1.2
towhee	chem	8.2.3
tpp	-	5.2.0, 6.0.0, 6.2.0, 7.3.0
trans-abyss	bio	2.0.1
transdecoder	bio	5.5.0, 5.7.1
transrate	bio	1.0.3
travis-analyzer	-	220729
treemix	-	1.13
trf	bio	4.09.1
trimal	bio	1.4
trimmomatic	bio	0.39
trinity	bio	2.11.0, 2.12.0, 2.13.2, 2.14.0
trinotate	bio	3.2.1, 3.2.2, 4.0.0
triqs	-	3.1.0, 3.1.1, 3.3.1
trnascan-se	bio	2.0.7, 2.0.12
twl-ninja	-	1.00
ucc	-	1.0.0, 1.2.0, 1.3.0, 1.4.4
ucc-cuda	-	1.0.0, 1.2.0, 1.3.0, 1.4.4
ucx	-	1.8.0, 1.9.0, 1.10.0, 1.12.1, 1.14.1, 1.16.0, 1.19.0
ucx-cuda	-	1.12.1, 1.14.1, 1.16.0, 1.19.0
udunits	tools	2.2.26, 2.2.28
unixodbc	-	2.3.9
usd	-	21.05
valgrind-mpi	tools	3.16.1, 3.21.0
varscan	-	2.4.2, 2.4.6
vasp	chem	5.4.4, 6.1.2, 6.4.2	VASP
vaspkit	-	1.5.1
vcflib	-	1.0.1, 1.0.3, 1.0.9
vcftools	bio	0.1.16
velvet	bio	1.2.10
verkko	-	2.3
viennarna	bio	2.4.17, 2.5.0, 2.5.1
virsorter	-	1.0.6
visit	vis	2.13.3, 3.2.1
vmatch	-	2.3.1
vmd	vis	1.9.3, 1.9.4a43, 1.9.4a57
vmtk	-	1.4.0
voro++	math	0.4.6
vsearch	bio	2.13.3, 2.13.4, 2.15.2, 2.21.1, 2.29.4
vtk	vis	8.2.0, 9.0.1, 9.1.0, 9.3.0, 9.4.2, 9.5.2, 9.6.0
vtk-mpi	vis	9.0.1, 9.0.3, 9.3.1, 9.4.2, 9.5.2, 9.6.0
vtune	tools	2020.1, 2022.2
w3emc	-	2.11.0
wannier90	chem	1.2, 3.1.0
wannier90-abinit	chem	2.0.1.1
wanniertools	-	2.7.0
wasp	-	3.1.4, 4.0.3, 4.2.0
wcslib	-	8.3
wfa2	-	2.3.4
wgrib2	geo	3.0.0
wham	math	2.1.0
winnowmap	-	2.03
wps	geo	4.1, 4.2, 4.6.0
wrf	geo	4.1.3, 4.2.1, 4.3.3, 4.4, 4.6.1, 4.7.1
wrf-cmaq	-	5.4
wrf-co2	geo	4.2.1
wsclean	-	3.6
wtdbg2	-	2.5
wxwidgets	tools	3.1.4, 3.1.7, 3.2.9
xbraid	-	3.1.0
xcrysden	vis	1.5.60, 1.6.2
xdrfile	tools	1.1.4
xerces-c++	tools	3.2.2
xml-libxml	-	2.0205, 2.0208
xmlf90	tools	1.5.4, 1.6.2
xnnpack	-	20250930
xtb	chem	6.3.3, 6.4.0, 6.4.1, 6.5.0, 6.5.1, 6.6.1, 6.7.1
xtensor	-	0.24.2, 0.25.0
yambo	chem	4.5.0, 5.0.4
yaml-cpp	-	0.7.0, 0.8.0
yaxt	tools	0.9.0, 0.9.1, 0.10.0
zeo++	-	0.3
zoltan	-	3.901

4ti2 details

Description

A software package for algebraic, geometric and combinatorial problems on linear spaces. Homepage: https://4ti2.github.io/ URL: https://4ti2.github.io/

abaqus details

Description

Finite Element Analysis (FEA) software for advanced engineering simulations involving stress analysis, conductive and convective heat transfer, mass diffusion, acoustics, piezoelectricity, electrochemistry independently, sequentially coupled, fully coupled using implicit and explicit robust solvers. This module contains the initial release Abaqus 2026 Golden with SIMULIA Abaqus, Isight, fe-safe, Tosca. Homepage: https://www.3ds.com/products/simulia/abaqus URL: https://www.3ds.com/products/simulia/abaqus Keyword:phys

abinit details

Description

ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. Homepage: https://www.abinit.org/ URL: https://www.abinit.org/ Keyword:chem

abricate details

Description

Mass screening of contigs for antimicrobial and virulence genes. Homepage: https://github.com/tseemann/abricate URL: https://github.com/tseemann/abricate

abseil details

Description

Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives. Homepage: https://abseil.io/ URL: https://abseil.io/

abyss details

Description

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler. Homepage: https://www.bcgsc.ca/platform/bioinfo/software/abyss URL: https://www.bcgsc.ca/platform/bioinfo/software/abyss Keyword:bio

actc details

Description

ACTC converts independent triangles into triangle strips or fans. Homepage: https://sourceforge.net/projects/actc URL: https://sourceforge.net/projects/actc

admixture details

Description

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimisation algorithm. Homepage: http://software.genetics.ucla.edu/admixture URL: http://software.genetics.ucla.edu/admixture Keyword:bio

adol-c details

Description

The package ADOL-C (Automatic Differentiation by OverLoading in C++) facilitates the evaluation of first and higher derivatives of vector functions that are defined by computer programs written in C or C++. The resulting derivative evaluation routines may be called from C/C++, Fortran, or any other language that can be linked with C. Homepage: https://projects.coin-or.org/ADOL-C URL: https://projects.coin-or.org/ADOL-C

adtree details

Description

AdTree: Accurate, Detailed, and Automatic Modelling of Laser-Scanned Trees. Homepage: https://github.com/tudelft3d/AdTree URL: https://github.com/tudelft3d/AdTree

advisor details

Description

Vectorisation Optimisation and Thread Prototyping - Vectorise and thread code or performance dies - Easy workflow + data + tips = faster code faster - Prioritise, Prototype and Predict performance gain. Homepage: https://software.intel.com/intel-advisor-xe URL: https://software.intel.com/intel-advisor-xe Keyword:tools

afni details

Description

AFNI is a set of C programs for processing, analysing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. Homepage: http://afni.nimh.nih.gov/ URL: http://afni.nimh.nih.gov/ Keyword:bio

alevin-fry details

Description

alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding. Homepage: https://github.com/COMBINE-lab/alevin-fry URL: https://github.com/COMBINE-lab/alevin-fry

alm details

Description

Spglib is a software for calculating harmonic and anharmonic interatomic force constants in solids and molecules. Homepage: https://github.com/ttadano/ALM URL: https://github.com/ttadano/ALM

almosthere details

Description

Progress indicator C library. ATHR is a simple yet powerful progress indicator library that works on Windows, Linux, and macOS. It is non-blocking as the progress update is done via a dedicated, lightweight thread, as to not impair the performance of the calling program. Homepage: https://github.com/horta/almosthere URL: https://github.com/horta/almosthere

alpscore details

Description

The ALPSCore project, based on the ALPS (Algorithms and Libraries for Physics Simulations) project, provides generic algorithms and utilities for physics problems. It strives to increase software reuse in the physics community. For copyright see COPYRIGHT.TXT For licensing see LICENSE.TXT For acknowledgment in scientific publications see ACKNOWLEDGE.TXT. Homepage: https://github.com/ALPSCore/ALPSCore URL: https://github.com/ALPSCore/ALPSCore Keyword:phys

amber details

Description

Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. Homepage: http://ambermd.org/amber.html URL: http://ambermd.org/amber.html Keyword:chem

amber-pmemd details

Description

Amber-PMEMD is Amber's high-performance MD engine, optimised for both CPU and GPU execution. Unlike earlier Amber versions, the amber-pmemd module no longer includes AmberTools. Homepage: https://ambermd.org/AmberTools.php URL: https://ambermd.org/AmberTools.php

ambertools details

Description

AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalised Born solvent models. Homepage: https://ambermd.org/AmberTools.php URL: https://ambermd.org/AmberTools.php Keyword:chem

amos details

Description

The AMOS consortium is committed to the development of open-source whole genome assembly software. Homepage: http://amos.sourceforge.net URL: http://amos.sourceforge.net

ampl-mp details

Description

An open-source library for mathematical programming. Homepage: https://github.com/ampl/mp URL: https://github.com/ampl/mp

amrfinderplus details

Description

This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. Homepage: https://github.com/ncbi/amr URL: https://github.com/ncbi/amr

amrplusplus details

Description

AmrPlusPlus v2.0 can process the raw data from the sequencer, identify the fragments of DNA, and count them. It also provides a count of the polymorphisms that occur in each DNA fragment with respect to the reference database. Homepage: https://megares.meglab.org/amrplusplus/latest/html/v2 URL: https://megares.meglab.org/amrplusplus/latest/html/v2

andi details

Description

This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes. Homepage: https://github.com/evolbioinf/andi/ URL: https://github.com/evolbioinf/andi/

angsd details

Description

Program for analysing NGS data. Homepage: http://www.popgen.dk/angsd URL: http://www.popgen.dk/angsd Keyword:bio

annovar details

Description

ANNOVAR is an efficient software tool to utilise update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others). Homepage: http://annovar.openbioinformatics.org/en/latest/ URL: http://annovar.openbioinformatics.org/en/latest/ Keyword:bio

anserini details

Description

An open-source information retreival toolkit built on Lucene that aims to bridge the gap between academic information retrieval and the practice of building real-world search applications. Usage: Binaries located in Anserini's target/appassembler/bin are on path. Anserini's folders bin, collections, docs, indexes, logs, runs, src, target, tools, as well as the files pom.xml and README.md are available at $EBROOTANSERINI. Eg. Indexing command for help: IndexCollection -h. Homepage: https://github.com/castorini/anserini URL: https://github.com/castorini/anserini

ansys details

Description

ANSYS simulation software enables organisations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater. Homepage: http://www.ansys.com URL: http://www.ansys.com Keyword:phys

ansysedt details

Description

ANSYS simulation software enables organisations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater. Homepage: http://www.ansys.com URL: http://www.ansys.com

ant details

Description

Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. Homepage: https://ant.apache.org/ URL: https://ant.apache.org/ Keyword:tools

antlr details

Description

ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognisers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. Homepage: https://www.antlr2.org/ URL: https://www.antlr2.org/

ants details

Description

ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualising multidimensional data. Homepage: https://stnava.github.io/ANTs/ URL: https://stnava.github.io/ANTs/ Keyword:vis

any2fasta details

Description

Convert various sequence formats to FASTA. Homepage: https://github.com/tseemann/any2fasta URL: https://github.com/tseemann/any2fasta

aocl-blas details

Description

AOCL-BLAS is AMD's optimised version of BLAS targeted for AMD EPYC and Ryzen CPUs. Homepage: https://github.com/amd/blis URL: https://github.com/amd/blis

aocl-lapack details

Description

AOCL-LAPACK is AMD's optimised version of LAPACK targeted for AMD EPYC and Ryzen CPUs. Homepage: https://github.com/amd/blis URL: https://github.com/amd/blis

apbs details

Description

APBS is a software package for modelling biomolecular solvation through solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Homepage: http://www.poissonboltzmann.org/apbs URL: http://www.poissonboltzmann.org/apbs Keyword:chem

apptainer details

Description

Apptainer/Singularity is an application containerisation solution for High-Performance Computing (HPC). The goal of Apptainer is to allow for "mobility of computing": an application containerised on one Linux system should be able to run on another system, as it is, and without the need to reconcile software dependencies and Linux version differences between the source and target systems. Homepage: https://apptainer.org URL: https://apptainer.org

aragorn details

Description

a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Homepage: http://www.ansikte.se/ARAGORN/ URL: http://www.ansikte.se/ARAGORN/

arb details

Description

Arb is a C library for arbitrary-precision interval arithmetic. It has full support for both real and complex numbers. The library is thread-safe, portable, and extensively tested. Homepage: https://arblib.org/ URL: https://arblib.org/

arcs details

Description

Scaffolding genome sequence assemblies using 10X Genomics GemCode/Chromium data. Homepage: https://github.com/bcgsc/arcs URL: https://github.com/bcgsc/arcs Keyword:bio

argtable details

Description

Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss. Homepage: http://argtable.sourceforge.net/ URL: http://argtable.sourceforge.net/ Keyword:tools

arioc details

Description

ACTC converts independent triangles into triangle strips or fans. Homepage: https://sourceforge.net/projects/actc URL: https://sourceforge.net/projects/actc

arks details

Description

Scaffolding genome sequence assemblies using 10X Genomics GemCode/Chromium data. Homepage: https://github.com/bcgsc/arcs URL: https://github.com/bcgsc/arcs

armadillo details

Description

Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Homepage: https://arma.sourceforge.net/ URL: https://arma.sourceforge.net/ Keyword:math

arpack-ng details

Description

ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Homepage: https://github.com/opencollab/arpack-ng URL: https://github.com/opencollab/arpack-ng Keyword:math

arrayfire details

Description

ArrayFire is a general-purpose library that simplifies the process of developing software that targets parallel and massively-parallel architectures including CPUs, GPUs, and other hardware acceleration devices. Homepage: https://arrayfire.com/ URL: https://arrayfire.com/

arrow details

Description

Apache Arrow is a cross-language development platform for in-memory data. Homepage: https://arrow.apache.org URL: https://arrow.apache.org Compatible modules: python/3.14, python/3.13, python/3.12, python/3.11 Keyword:tools

ascp details

Description

Aspera ASCP is a high speed file transfer software. Homepage: http://downloads.asperasoft.com/ URL: http://downloads.asperasoft.com/ Keyword:tools

aspect details

Description

ASPECT: Advanced Solver for Problems in Earth's ConvecTion. An extensible code written in C++ to support research in simulating convection in the Earth's mantle and elsewhere to provide the geosciences with a well-documented and extensible code base for their research needs and to create an open, inclusive, participatory community providing users and developers with a state-of-the-art, comprehensive software that performs well while being simple to extend. Homepage: https://aspect.geodynamics.org/ URL: https://aspect.geodynamics.org/

assimp details

Description

Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data. Homepage: https://github.com/assimp/assimp URL: https://github.com/assimp/assimp

astrid details

Description

ASTRID-2 is a method for estimating species trees from gene trees. Homepage: https://github.com/pranjalv123/ASTRID URL: https://github.com/pranjalv123/ASTRID

atat details

Description

ATAT is a generic name that refers to a collection of alloy theory tools developed by Axel van de Walle, in collaboration with various research groups and with various sources of financial support. Homepage: https://www.brown.edu/Departments/Engineering/Labs/avdw/atat/ URL: https://www.brown.edu/Departments/Engineering/Labs/avdw/atat/

atom details

Description

ATOM is the name of a program originally written (circa 1982) by Sverre Froyen at the University of California at Berkeley,